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RECOMB congratulates the following authors of papers selected for presentation during the conference. Ali Bashir, Qing Lu, Ben Raphael, Dennis Carson, Yu-Tsueng Liu, Vineet Bafna
"Optimizing PCR assays for DNA based cancer diagnostics"
Sharon Bruckner, Falk Hüffner, Richard Karp, Ron Shamir, Roded Sharan
"Topology-free querying of protein interaction networks"
Cedric Chauve, Nadia El-Mabrouk
"New perspectives on gene family evolution: losses in reconciliation and a link with supertrees"
Constantinos Daskalakis, Elchanan Mossel, Sebastien Roch
"Phylogenies without branch bounds: contracting the short, pruning the deep"
Alexandre Donze, Gilles Clermont, Axel Legay, Christopher Langmead
"Parameter synthesis in nonlinear dynamical systems: application to systems biology"
Banu Dost, Vineet Bafna, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs
"Shared peptides in mass spectrometry based protein quantification"
Dan Gusfield
"The multi-state perfect phylogeny problem with missing and removable data"
Zengyou He, Chao Yang, Can Yang, Robert Qi, Jason Po-Ming Tam, Weichuan Yu
"Optimization-based peptide mass fingerprinting for protein mixture identification"
Benjamin Hescott, Mark Leiserson, Lenore Cowen, Donna Slonim
"Evaluating between-pathway models with expression data"
Fereydoun Hormozdiari, Can Alkan, Evan Eichler, Cenk Sahinalp
"Combinatorial algorithms for structural variation detection in high throughput sequenced genomes"
Eun Yong Kang, Ilya Shpitser, Hyun Min Kang, Chun Ye, Eleazar Eskin
"Detecting the presence and absence of causal relationships between expression of yeast genes with very few samples"
Hyun Min Kang, Noah Zaitlen, Buhm Han, Eleazar Eskin
"An adaptive and memory efficient algorithm for genotype imputation"
Eagu Kim, Travis Wheeler, John Kececioglu
"Learning models for aligning protein sequences with predicted secondary structure"
Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard Karp
"Haplotype inference in complex pedigrees"
Mathieu Lavallee-Adam, Benoit Coulombe, Mathieu Blanchette
"Detection of locally over-represented GO terms in protein-protein interaction networks"
Yong Lu, Roni Rosenfeld, Gerard Nau, Ziv Bar-Joseph
"Cross species expression analysis of innate immune response"
Veli Makinen, Gonzalo Navarro, Jouni Siren, Niko Valimaki
"Storage and retrieval of individual genomes"
Mathias Mohl, Sebastian Will, Rolf Backofen
"Lifting prediction to alignment of RNA pseudoknots"
Seungjin Na, Eunok Paek
"Prediction of novel modifications by unrestrictive search of tandem mass spectra"
Saket Navlakha, James White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford
"Finding biologically accurate clusterings in hierarchical decompositions using the variation of information"
Nicholas Pattengale, Masoud Alipour, Olaf Bininda-Emonds, Bernard Moret, Alexandros Stamatakis
"How many bootstrap replicates are necessary?"
Jian Peng, Jinbo Xu
"Boosting protein threading accuracy"
Snehit Prabhu, Itsik Pe'er
"Overlapping pools for high throughput targeted resequencing"
Arvind Ramanathan, Pratul Agarwal, Maria Kurnikova, Christopher Langmead
"An online approach for mining collective behaviors from molecular dynamics simulations"
Tali Raveh-Sadka, Michal Levo, Eran Segal
"Incorporating nucleosomes into thermodynamic models of transcription regulation"
Sheila Reynolds, Jeff Bilmes, William Stafford Noble
"On the relationship between DNA periodicity and local chromatin structure"
Itai Sharon, Amrita Pati, Victor Markowitz, Ron Pinter
"A statistical framework for the functional analysis of metagenomes"
Tetsuo Shibuya
"Searching protein 3-D structures in linear time"
Suzanne Sindi, Ben Raphael
"Identification and frequency estimation of inversion polymorphisms from haplotype data"
Oliver Stegle, Katherine Denby, David Wild, Zoubin Ghahramani, Karsten Borgwardt
"A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series"
Krister Swenson, Vaibhav Rajan, Yu Lin, Bernard Moret
"Sorting signed permutations by inversions in O(n log n) time"
Amos Tanay, Ram Jaschek
"Spatial clustering of multivariate genomic and epigenomic information"
Jerome Waldispuhl, Charles O'Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger
"Simultaneous alignment and folding of protein sequences"
Osvaldo Zagordi, Lukas Geyrhofer, Volker Roth, Niko Beerenwinkel
"Deep sequencing of a genetically heterogeneous sample: local haplotype reconstruction and read error correction"
Xiang Zhang, Feng Pan, Yuying Xie, Fei Zou, Wei Wang
"COE: a general approach for efficient genome-wide two-locus epispastic test in disease association study"
Feng Zhao, Jian Peng, Jinbo Xu
"A probabilistic graphical model for ab initio folding"
Wei Zheng, Karl Griswold, Chris Bailey-Kellogg
"Protein fragment swapping: a method for asymmetric, sensitive site-directed recombination"
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