Nearly half the earth's surface is occupied by dryland ecosystems, regions susceptible to reduced states of biological productivity caused by climate fluctuations. Of these regions, arid zones located at the interface between vegetated semiarid regions and biologically unproductive hyperarid zones are considered most vulnerable. The objective of this study was to conduct a deep diversity analysis of bacterial communities in unvegetated arid soils of the Atacama Desert, to characterize community structure and infer the functional potential of these communities based on observed phylogenetic associations. A 454-pyrotag analysis was conducted of three unvegetated arid sites located at the hyperarid-arid margin. The analysis revealed communities with unique bacterial diversity marked by high abundances of novel Actinobacteria and Chloroflexi and low levels of Acidobacteria and Proteobacteria, phyla that are dominant in many biomes. A 16S rRNA gene library of one site revealed the presence of clones with phylogenetic associations to chemoautotrophic taxa able to obtain energy through oxidation of nitrite, carbon monoxide, iron, or sulfur. Thus, soils at the hyperarid margin were found to harbor a wealth of novel bacteria and to support potentially viable communities with phylogenetic associations to non-phototrophic primary producers and bacteria capable of biogeochemical cycling.
PMID: 12809290;Abstract:
Few effective strategies exist for remediating and restoring metal-contaminated soils. We have evaluated the potential of two environmentally compatible, nondestructive, biological soil-washing agents for remediating aged, lead-contaminated soils. Two contaminated soils were washed with 10 mM rhamnolipid biosurfactant and 5.3% carboxy-methyl-β-cyclodextrin (CMCD). The metal removal efficiency of these agents was compared with 10 mM diethylenetriamine pentaacetic acid (DTPA) and 10 mM KNO3. Lead removal rates by both soil-washing agents exceeded the removal by KNO3, but were an order of magnitude less than removal by the synthetic chelator, DTPA. Analysis of soil extractions revealed that the Pb in the first soil (3780 mg kg-1) was primarily associated with the soluble, exchangeable, oxide, and residual fractions while the Pb in the second soil (23 900 mg kg-1) was found in the soluble, exchangeable, carbonate, and residual fractions. After 10 consecutive washes, rhamnolipid had removed 14.2 and 15.3% of the Pb from the first and second soils, respectively, and CMCD had removed 5 and 13.4% from the same two soils. The Pb removal rate by both agents either increased or was consistent throughout the 10 extractions, indicating a potential for continued removal with extended washing. Significant levels of Cu and Zn in both soils did not prevent Pb removal by either agent. Interestingly, the effectiveness of each agent varied as a function of Pb speciation in the soil. Rhamnolipid was more effective than CMCD in removing Pb bound to amorphous iron oxides, while both agents demonstrated similar potential for removing soluble, exchangeable, and carbonate-bound Pb. Neither agent demonstrated potential for the complete remediation of metal-contaminated soils.
Abstract:
It was previously reported that rhamnolipid bisurfactant from Pseudomonas aeruginosa ATCC 9027 can be used to remediate contaminated sites. Since the effective use of rhamnolipid require an understanding of its morphology as well as the effects of pH and organic and inorganic contaminants on that morphology, cryo-transmission electron microscopy was used to examine the morphology of vitrified, frozen hydrated suspensions of rhamnolipid over a pH range of 5.5 to 8.0. The effect of a model alkane, octadecane and a model heavy metal cadmium on the morphology of the rhamnolipid was also determined. Results obtained are found to be satisfactory.
Abstract:
Agricultural practices may cause contamination of soil and ground water with a combination of organic compounds (pesticides and fuel) and nitrogen fertilizers. In coupled microcosm studies that monitored the mineralization of naphthalene and the nitrification of ammonia, it was observed that the solvent (dichloromethane) used to apply naphthalene to the soil inhibited nitrification, although there was no effect on naphthalene mineralization. Further studies were performed with a series of application solvents: methanol, acetonitrile, trichloromethane, and dichloromethane. Soil and solvent were allowed to equilibrate with ambient air for various times before capping and incubation of microcosm. Results indicated that dichloromethane equilibrated for 5 mins inhibited nitrification for at least 3 weeks relative to the control (water). Acetonitrile and trichloromethane similarly inhibited nitrification. Methanol and dichloromethane equilibrated for 60 mins also significantly delayed nitrification, although to a lesser extent. Inhibition of nitrification was not permanent, and nitrification activity was eventually restored in all systems tested. None of the solvents inhibited mineralization of the added carbon source. These results indicate that special care must be taken to ensure that applications solvents do not affect the activity of sensitive microbial populations, such as the nitrifiers, that may be part of a study.
Abstract:
Phytoremediation is an emerging technology for the remediation of mine tailings, a global problem for which conventional remediation technologies are costly. There are two approaches to phytoremediation of mine tailings, phytoextraction and phytostabilization. Phytoextraction involves translocation of heavy metals from mine tailings to the plant shoot biomass followed by plant harvest, while phytostabilization focuses on establishing a vegetative cap that does not shoot accumulate metals but rather immobilizes metals within the tailings. Phytoextraction is currently limited by low rates of metal removal which is a combination of low biomass production and insufficiently high metal uptake into plant tissue. Phytostabilization is currently limited by a lack of knowledge of the minimum amendments required (e.g., compost, irrigation) to support long-term plant establishment. This review addresses both strategies within the context of two specific climate types: temperate and arid. In temperate environments, mine tailings are a source of metal leachates and acid mine drainage that contaminate nearby waterways. Mine tailings in arid regions are subject to eolian dispersion and water erosion. Examples of phytoremediation within each of these environments are discussed. Current research suggests that phytoextraction, due to high implementation costs and long time frames, will be limited to sites that have high land values and for which metal removal is required. Phytostabilization, due to lower costs and easier implementation, will be a more commonly used approach. Complete restoration of mining sites is an unlikely outcome for either approach. © 2007 Springer Science+Business Media B.V.
