Xianchun Li

Xianchun Li

Professor, Entomology
Professor, Entomology / Insect Science - GIDP
Professor, BIO5 Institute
Primary Department
Department Affiliations
Contact
(520) 626-1749

Work Summary

Xianchun Li's research aims to use genetics to shed light on the defense signaling of plants and the counterdefense of herbivorous insects, which may result in the design of new insecticides for crops like corn, in defense against the corn earworm. Additionally, Dr. Li's research is to define, globally, the regulatory triangle between nuclear receptors (NRs), their ligands, and cytochrome P450s (P450s) in Drosophila melanogaster, and to investigate the molecular mechanisms of Bt and conventional insecticide resistance.

Research Interest

Xianchun Li, PhD, is interested in understanding the physiological, biochemical, molecular and evolutionary bases of fundamental processes in the life history of insects such as embryonic polarity, metamorphosis, developmental commitment, host usage and environmental adaptation. One focus of his research is to elucidate the reciprocal signaling interactions between plants and insects, and the resulted on-going defense (in the case of plants) / counterdefense (in the case of herbivorous insects) phenotypic arm race over ecological time scale, with emphasis on the genetic machinery that percepts and transduces the reciprocal cues into genome and regulate defense / counterdefense phenotypes. Working systems include Helicoverpa zea, the corn earworm, a polyphagous noctuide of economic importance, and Drosophila melanogaster, the fruit fly, a model organism. State of arts and traditional techniques are combining to identify the cues and to uncover the signaling transduction cascade that links environmental cues, gene expression and the resulted defense/counterdefense phenotypes. This research may lead to characterization of genes for designing new insecticides and/or genetically modifying crops. The second focus of Dr. Li’s research is to define, globally, the regulatory triangle between nuclear receptors (NRs), their ligands, and cytochrome P450s (P450s) in Drosophila melanogaster. Nuclear receptors (NRs) constitute a transcription factor superfamily that has evolved to sense and bind endogenous (e.g., hormones) and/or exogenous (e.g., naturally-occurring or synthetic xenobiotics) signal compounds, resulting in differential expression of particular target genes, which underlies a range of fundamental biological processes, including growth, development, reproduction, behavior, host usage, and environmental adaptation. Many of those cue chemicals, namely NR ligands, are synthesized and/or metabolized by members of the P450s gene superfamily, whose expression may be regulated by certain NRs. Bioinformatics analyses as well as systematic functional genomic techniques such as microarray, X-ChIP, mutation and ectopic expression will be combined to define the genome-wide regulatory interaction loops between NRs and P450s as well as to assign, at least partially, functions of individual NRs and P450s in the life history of fruit fly. Given the evolutionary conservations of homologous NRs and P450s between vertebrates and invertebrates, the results obtained in this project are expected to provide insights into the reciprocal regulatory interactions between NRs and P450s in other animals including humans as well as to provide great insights into new avenue for human NR ligand identification and NR-related drug design. The third focus of his research is to investigate the molecular mechanisms of Bt and conventional insecticide resistance, which is a major threat in current IPM system. In collaboration with Dr. Bruce Tabashnik, Timothy Dennehy, and Yves Carriere in our Department, Dr. Li is going to compare Bt toxin binding affinity and other defects of natural (s, r1, r2, r3) and artificial mutant PBW (Pink Bollworm) cadherin proteins and thus define the key functional domains of PBW cadherin.

Publications

Xianchun, L. i., Bai, S., & Cass, B. N. (2012). Accord insertion in the 5' flanking region of CYP6G1 confers nicotine resistance in Drosophila melanogaster. Gene, 502(1), 1-8.

PMID: 22543020;Abstract:

What has driven the sweep of the Accord retrotransposon insertion allele of CYP6G1 in the natural populations of Drosophila melanogaster is unknown. Previous studies on the DDT selection hypothesis produced conflicting data. To reexamine the DDT selection hypothesis and search for alternative explanations, we conducted a series of correlation and genetic linkage experiments with eight D. melanogaster natural populations collected from California (CM1, CM2, CM3, and CM7) and Africa (AM2, AM3, AM4, AM7). Diagnostic PCR showed that CM1, CM2, CM7, and AM3 have the Accord insertion in the CYP6G1 locus, whereas the other four strains do not. RT-PCR analysis exhibits a 100% correlation between Accord insertion and CYP6G1 overexpression. However, among the four strains with Accord-mediated CYP6G1 overexpression only CM1 and CM7 are resistant to DDT, and the other two strains (CM2 and AM3), like the four Accord-free strains, are susceptible to DDT. By contrast, all the four strains with Accord-mediated CYP6G1 overexpression are resistant to nicotine, a plant allelochemical. Genetic crosses between DDT resistant and susceptible Accord-insertion strains, as well as crosses between Accord-insertion and Accord-free strains demonstrated that Accord insertion and CYP6G1 overexpression are genetically linked to nicotine resistance rather than DDT resistance. These results suggest that naturally-occurring allelochemicals such as nicotine are the initial driving force for the worldwide prevalence of the Accord insertion allele of CYP6G1 in D. melanogaster natural populations. © 2012 Elsevier B.V.

Du, E., Ni, X., Zhao, H., & Xianchun, L. i. (2011). Natural history and intragenomic dynamics of the Transib transposon Hztransib in the cotton bollworm Helicoverpa zea. Insect Molecular Biology, 20(3), 291-301.

PMID: 21166910;PMCID: PMC3086985;Abstract:

Hztransib, recently identified from Helicoverpa zea, represents the first intact and transcriptionally active Transib element. Its open reading frame was detected in Helicoverpa armigera, from which H. zea evolved, and in Helicoverpa assulta, the common ancestor of H. zea and H. armigera, but its remaining parts were found only in H. armigera. Thirty-nine Hztransib insertion sites, all of which are polymorphic, were detected from eight populations of H. zea. Out of the 39 insertion sites, 35 were not frequently occupied, with 1-33 occurrences in a total of 128 individuals from the eight populations (16 larvae per population). Its copy number ranged from 5.8 to 14.2 per individual, with putative intact copies always more abundant than internally deleted ones. Taking this evidence together, Hztransib probably transferred to H. zea from H. armigera and most likely still retains its capacity to maintain structural integrity, increase copy number and remobilize in H. zea. © 2010 The Authors Insect Molecular Biology © 2010 The Royal Entomological Society.

Zhang, C., Wong, A., Zhang, Y., Ni, X., & Li, X. (2014). Common and unique cis-acting elements mediate xanthotoxin and flavone induction of the generalist P450 CYP321A1. Scientific reports, 4, 6490.

How polyphagous herbivores up-regulate their counterdefense genes in response to a broad range of structurally different allelochemicals remains largely unknown. To test whether this is accomplished by having more allelochemical-response elements or the similar number of functionally more diverse elements, we mapped out the cis-acting elements mediating the induction of the allelochemical-metabolizing CYP321A1 from the generalist Helicoverpa zea by xanthotoxin and flavone, two structurally distinct allelochemicals with very different encounter rate by this species. Seven xanthotoxin-responsive elements were localized by analyzing promoter activities of varying length of CYP321A1 promoter in H. zea fatbody cells. Compared with the 5 flavone-responsive elements mapped out previously, there are four common elements (1 essential element, 2 enhancers, and 1 negative element) mediating induction of CYP321A1 by both of the two allelochemicals. The remaining four elements (3 enhancers and 1 negative element), however, only regulate induction of CYP321A1 by either of the two allelochemicals. Co-administration of the two allelochemicals resulted in an induction fold that is significantly lower than the expected additive value of the two allelochemicals. These results indicate that xanthotoxin- and flavone-induced expressions of CYP321A1 are mediated mainly by the functionally more diverse common elements although the allelochemical-unique elements also play a role.

Li, X. (2014). A key amino acid associated with acephate detoxification by Cydia pomonella carboxylesterase based on molecular dynamics with alanine scanning and site-directed mutagenesis.. Journal of Chemical Information and Modeling, 54(5), 1356-1370.
Xiao, Y., Zhang, T., Liu, C., Heckel, D. G., Li, X., Tabashnik, B. E., & Wu, K. (2014). Mis-splicing of the ABCC2 gene linked with Bt toxin resistance in Helicoverpa armigera. Scientific reports, 4, 6184.

Toxins from the bacterium Bacillus thuringiensis (Bt) are used widely for insect control in sprays and transgenic plants, but their efficacy is reduced when pests evolve resistance. Previous work showed that mutations in a gene encoding the transporter protein ABCC2 are linked with resistance to Bt toxins Cry1Ab, Cry1Ac or both in four species of Lepidoptera. Here we compared the ABCC2 gene of Helicoverpa armigera (HaABCC2) between susceptible strains and a laboratory-selected strain with >1,000-fold resistance to Cry1Ac relative its susceptible parent strain. We discovered a 73-base pair (bp) insertion in the cDNA of the resistant strain that generates a premature stop codon expected to yield a truncated ABCC2 protein. Sequencing of genomic DNA revealed that this insertion is an intron that is not spliced out because of a 6-bp deletion at its splicing site. Analysis of progeny from crosses revealed tight genetic linkage between HaABCC2 and resistance to Cry1Ac. These results provide the first evidence that mis-splicing of a gene encoding an ABCC2 protein confers resistance to a Bt toxin.